Josh D. Neufeld: search on Z-Library

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1

The Influence of Vegetation Type on the Dominant Soil Bacteria, Archaea, and Fungi in a Low Arctic Tundra Landscape

Chu, Haiyan, Neufeld, Josh D., Walker, Virginia K., Grogan, Paul

Journal:

Soil Science Society of America Journal

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

2

Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain

William W. Mohn, Birgit Mertens, Josh D. Neufeld, Willy Verstraete, Victor De Lorenzo

Journal:

Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 175 KB

english, 2006

3

Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray

Josh D. Neufeld, William W. Mohn, Victor De Lorenzo

Journal:

Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 417 KB

english, 2006

4

Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm

Bartram, Andrea K., Jiang, Xingpeng, Lynch, Michael D.J., Masella, Andre P., Nicol, Graeme W., Dushoff, Jonathan, Neufeld, Josh D.

Journal:

FEMS Microbiology Ecology

Year:

2014

Language:

english

File:

PDF, 827 KB

english, 2014

5

Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters

Sauder, Laura A., Engel, Katja, Stearns, Jennifer C., Masella, Andre P., Pawliszyn, Richard, Neufeld, Josh D., Gilbert, Jack Anthony

Journal:

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

6

Who eats what, where and when? Isotope-labelling experiments are coming of age

Neufeld, Josh D, Wagner, Michael, Murrell, J Colin

Journal:

The ISME Journal

Year:

2007

Language:

english

File:

PDF, 116 KB

english, 2007

7

Comparison of chloroform fumigation-extraction, phospholipid fatty acid, and DNA methods to determine microbial biomass in forest humus

Sara E. Leckie, Cindy E. Prescott, Susan J. Grayston, Josh D. Neufeld, William W. Mohn

Journal:

Soil Biology and Biochemistry

Year:

2004

Language:

english

File:

PDF, 87 KB

english, 2004

8

Insight into the microbial community structure of a Norwegian deep-water coral reef environment

Sigmund Jensen, Josh D. Neufeld, Nils-Kåre Birkeland, Martin Hovland, J. Colin Murrell

Journal:

Deep Sea Research Part I: Oceanographic Research Papers

Year:

2008

Language:

english

File:

PDF, 684 KB

english, 2008

9

Nonlinear electrophoresis for purification of soil DNA for metagenomics

Katja Engel, Lee Pinnell, Jiujun Cheng, Trevor C. Charles, Josh D. Neufeld

Journal:

Journal of Microbiological Methods

Year:

2012

Language:

english

File:

PDF, 577 KB

english, 2012

10

Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities

Jensen, Sigmund, Lynch, Michael D. J., Ray, Jessica L., Neufeld, Josh D., Hovland, Martin

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 748 KB

english, 2014

11

Bacterial biogeography of the human digestive tract

Stearns, Jennifer C., Lynch, Michael D. J., Senadheera, Dilani B., Tenenbaum, Howard C., Goldberg, Michael B., Cvitkovitch, Dennis G., Croitoru, Kenneth, Moreno-Hagelsieb, Gabriel, Neufeld, Josh D.

Journal:

Scientific Reports

Year:

2011

Language:

english

File:

PDF, 2.04 MB

english, 2011

12

Graphic Literature || "Bag of Mice"

Nick Flynn and Josh Neufeld

Journal:

World Literature Today

Year:

2007

Language:

english

File:

PDF, 1.34 MB

english, 2007

13

Biogeography of soil Thaumarchaeota in relation to soil depth and land usage

Lu, Xinda, Seuradge, Brent J., Neufeld, Josh D., de Boer, Wietse

Journal:

FEMS Microbiology Ecology

Year:

2017

Language:

english

File:

PDF, 435 KB

english, 2017

14

Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity

Coyotzi, Sara, Doxey, Andrew C., Clark, Ian D., Lapen, David R., Van Cappellen, Philippe, Neufeld, Josh D.

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 5.20 MB

english, 2017

15

Differential responses of soil ammonia-oxidizing archaea and bacteria to temperature and depth under two different land uses

Lu, Xinda, Nicol, Graeme W., Neufeld, Josh D.

Journal:

Soil Biology and Biochemistry

Year:

2018

Language:

english

File:

PDF, 529 KB

english, 2018

16

Hypoxic Methane Oxidation Coupled to Denitrification in a Membrane Biofilm

Alrashed, Wael, Lee, Jangho, Park, Joonhong, Rittmann, Bruce E., Tang, Youneng, Neufeld, Josh D., Lee, Hyung-Sool

Journal:

Chemical Engineering Journal

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

17

Truffle Brûlés Have an Impact on the Diversity of Soil Bacterial Communities

Mello, Antonietta, Ding, Guo-Chun, Piceno, Yvette M., Napoli, Chiara, Tom, Lauren M., DeSantis, Todd Z., Andersen, Gary L., Smalla, Kornelia, Bonfante, Paola, Neufeld, Josh

Journal:

Year:

2013

Language:

english

File:

PDF, 252 KB

english, 2013

18

Pygenprop: a Python library for programmatic exploration and comparison of organism Genome Properties

Bergstrand, Lee H, Neufeld, Josh D, Doxey, Andrew C, Hancock, John

Journal:

Year:

2019

Language:

english

File:

PDF, 217 KB

english, 2019

19

Expanding perspectives of soil nitrification to include ammonia-oxidizing archaea and comammox bacteria

Lu, Xinda, Taylor, Anne E., Myrold, David D., Neufeld, Josh D.

Journal:

Soil Science Society of America Journal

Year:

2019

File:

PDF, 952 KB

2019

20

Isotopes as tools for microbial ecologists

Marc G Dumont, Josh D Neufeld, J Colin Murrell

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 55 KB

english, 2006

21

Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities

Josh D. Neufeld, Zhongtang Yu, Wan Lam, William W. Mohn

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 617 KB

english, 2004

22

Methodological Considerations for the Use of Stable Isotope Probing in Microbial Ecology

Josh D. Neufeld, Marc G. Dumont, Jyotsna Vohra, J. Colin Murrell

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 372 KB

english, 2007

23

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

Josh D. Neufeld, Yin Chen, Marc G. Dumont, J. Colin Murrell

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 286 KB

english, 2008

24

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands

Yin Chen, Marc G. Dumont, Josh D. Neufeld, Levente Bodrossy, Nancy Stralis-Pavese, Niall P. McNamara, Nick Ostle, Maria J. I. Briones, J. Colin Murrell

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 441 KB

english, 2008

25

Omics for understanding microbial functional dynamics

Janet K. Jansson, Josh D. Neufeld, Mary Ann Moran, Jack A Gilbert

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 296 KB

english, 2012

26

Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway

Sigmund Jensen, Josh D. Neufeld, Nils-Kåre Birkeland, Martin Hovland, John Colin Murrell

Journal:

FEMS Microbiology Ecology

Year:

2008

Language:

english

File:

PDF, 593 KB

english, 2008

27

Scratching the surface of the rare biosphere with ribosomal sequence tag primers

Josh D. Neufeld, Jason Li, William W. Mohn

Journal:

FEMS Microbiology Letters

Year:

2008

Language:

english

File:

PDF, 230 KB

english, 2008

28

Witnessing the last supper of uncultivated microbial cells with Raman-FISH

Neufeld, Josh D, Murrell, J Colin

Journal:

The ISME Journal

Year:

2007

Language:

english

File:

PDF, 57 KB

english, 2007

29

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

Neufeld, Josh D, Schäfer, Hendrik, Cox, Michael J, Boden, Rich, McDonald, Ian R, Murrell, J Colin

Journal:

The ISME Journal

Year:

2007

Language:

english

File:

PDF, 217 KB

english, 2007

30

Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology

Lasken, Roger S, Neufeld, Josh D, Binga, Erik K

Journal:

The ISME Journal

Year:

2008

Language:

english

File:

PDF, 163 KB

english, 2008

31

DNA stable-isotope probing

Neufeld, Josh D, Vohra, Jyotsna, Dumont, Marc G, Lueders, Tillmann, Manefield, Mike, Friedrich, Michael W, Murrell, J Colin

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 298 KB

english, 2007

32

PANDAseq: paired-end assembler for illumina sequences

Andre P Masella, Andrea K Bartram, Jakub M Truszkowski, Daniel G Brown, Josh D Neufeld

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 181 KB

english, 2012

33

Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant

Laura A. Sauder, Francien Peterse, Stefan Schouten, Josh D. Neufeld

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 835 KB

english, 2012

34

DNA Stable-Isotope Probing (DNA-SIP)

Dunford, Eric A., Neufeld, Josh D.

Journal:

Journal of Visualized Experiments

Year:

2010

Language:

english

File:

PDF, 343 KB

english, 2010

35

Identification of active methylotrophic bacteria inhabiting surface sediment of a marine estuary

Hélène Moussard, Nancy Stralis-Pavese, Levente Bodrossy, Josh D. Neufeld, J. Colin Murrell

Journal:

Environmental Microbiology Reports

Year:

2009

Language:

english

File:

PDF, 387 KB

english, 2009

36

OTU Analysis Using Metagenomic Shotgun Sequencing Data

Hao, Xiaolin, Chen, Ting, Neufeld, Josh

Journal:

Year:

2012

Language:

english

File:

PDF, 711 KB

english, 2012

37

The Impact of Environmental Heterogeneity and Life Stage on the Hindgut Microbiota of Holotrichia parallela Larvae (Coleoptera: Scarabaeidae)

Huang, Shengwei, Zhang, Hongyu, Neufeld, Josh

Journal:

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

38

Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae?

Miranda, Lilibeth N., Hutchison, Keith, Grossman, Arthur R., Brawley, Susan H., Neufeld, Josh

Journal:

Year:

2013

Language:

english

File:

PDF, 2.64 MB

english, 2013

39

Tu1797 The Adoptive Transfer of Anxiety and Gut Dysfunction From IBS Patients to Axenic Mice Through Microbiota Transplantation

De Palma, Giada, Lynch, Michael D., Lu, Jun, Deng, Yikang, Jury, Jennifer, Umeh, Genevieve, McLean, Peter, Bergonzelli, Gabriela E., Verdu, Elena F., Surette, Michael, Neufeld, Josh, Collins, Stephen

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 339 KB

english, 2014

40

Biokinetics and bacterial communities of propionate oxidizing bacteria in phased anaerobic sludge digestion systems

Zamanzadeh, Mirzaman, Parker, Wayne J., Verastegui, Yris, Neufeld, Josh D.

Journal:

Year:

2013

Language:

english

File:

PDF, 616 KB

english, 2013

41

Biokinetic and molecular studies of methanogens in phased anaerobic digestion systems

Zamanzadeh, Mirzaman, Parker, Wayne J., Verastegui, Yris, Neufeld, Josh D.

Journal:

Bioresource Technology

Year:

2013

Language:

english

File:

PDF, 861 KB

english, 2013

42

Microbial Ecology, from Genomics to Metagenomics || Methodological Considerations for the Use of Stable Isotope Probing in Microbial Ecology

Josh D. Neufeld, Marc G. Dumont, Jyotsna Vohra and J. Colin Murrell

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 1.61 MB

english, 2007

43

Versatile broad-host-range cosmids for construction of high quality metagenomic libraries

Cheng, Jiujun, Pinnell, Lee, Engel, Katja, Neufeld, Josh D., Charles, Trevor C.

Journal:

Journal of Microbiological Methods

Year:

2014

Language:

english

File:

PDF, 672 KB

english, 2014

44

Recovering glycoside hydrolase genes from active tundra cellulolytic bacteria

Pinnell, Lee J., Dunford, Eric, Ronan, Patrick, Hausner, Martina, Neufeld, Josh D.

Journal:

Canadian Journal of Microbiology

Year:

2014

File:

PDF, 446 KB

2014

45

Opinion: Conservation and stewardship of the human microbiome

O’Doherty, Kieran C., Neufeld, Josh D., Brinkman, Fiona S. L., Gardner, Humphrey, Guttman, David S., Beiko, Robert G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 682 KB

english, 2014

46

Quantifying functional gene populations: comparing gene abundance and corresponding enzymatic activity using denitrification and nitrogen fixation in pulp and paper mill effluent treatment systems

Neufeld, Josh D, Driscoll, Brian T, Knowles, Roger, Archibald, Frederick S

Journal:

Canadian Journal of Microbiology

Year:

2001

File:

PDF, 847 KB

2001

47

Phylogenetic identification of methanogens assimilating acetate-derived carbon in dairy and swine manures

Barret, Maialen, Gagnon, Nathalie, Morissette, Bruno, Kalmokoff, Martin L., Topp, Edward, Brooks, Stephen P.J., Matias, Fernando, Neufeld, Josh D., Talbot, Guylaine

Journal:

Systematic and Applied Microbiology

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

48

Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production

Doxey, Andrew C, Kurtz, Daniel A, Lynch, Michael DJ, Sauder, Laura A, Neufeld, Josh D

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 2.83 MB

english, 2015

49

Ecology and exploration of the rare biosphere

Lynch, Michael D. J., Neufeld, Josh D.

Journal:

Nature Reviews Microbiology

Year:

2015

Language:

english

File:

PDF, 437 KB

english, 2015

50

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

Shi, Yu, Xiang, Xingjia, Shen, Congcong, Chu, Haiyan, Neufeld, Josh D., Walker, Virginia K., Grogan, Paul, Schloss, P. D.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015